a-ludi / djunctor

Close assembly gaps using long-reads with focus on correctness.
MIT License
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Is the self-alignment essential? #49

Open a-ludi opened 6 years ago

a-ludi commented 6 years ago

The repeat mask derived from the self-alignment seems be a strict subset of the mask derived from the read alignment. Thus, we may skip the self-alignment saving computation resources and reducing complexity of the algorithm.