a-r-j / graphein

Protein Graph Library
https://graphein.ai/
MIT License
1.03k stars 131 forks source link

[WIP] Graph Analytics #103

Closed a-r-j closed 2 years ago

a-r-j commented 2 years ago

What does this implement/fix? Explain your changes

Adds a host of plotting functions to Graphein for improved visualisation.

What testing did you do to verify the changes in this PR?

Execution tests on tutorial notebooks.

codecov-commenter commented 2 years ago

Codecov Report

Merging #103 (6aa928b) into master (8123f42) will increase coverage by 0.85%. The diff coverage is 34.78%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #103      +/-   ##
==========================================
+ Coverage   40.27%   41.12%   +0.85%     
==========================================
  Files          48       50       +2     
  Lines        2811     3154     +343     
==========================================
+ Hits         1132     1297     +165     
- Misses       1679     1857     +178     
Impacted Files Coverage Δ
graphein/protein/analysis.py 0.00% <0.00%> (ø)
graphein/protein/visualisation.py 12.93% <9.67%> (-3.29%) :arrow_down:
graphein/protein/features/nodes/amino_acid.py 80.43% <50.00%> (-3.29%) :arrow_down:
graphein/protein/graphs.py 74.21% <66.66%> (+2.51%) :arrow_up:
graphein/protein/utils.py 68.00% <73.33%> (+16.78%) :arrow_up:
graphein/protein/subgraphs.py 73.64% <73.64%> (ø)
graphein/__init__.py 100.00% <100.00%> (ø)
graphein/protein/__init__.py 84.61% <100.00%> (+1.28%) :arrow_up:
graphein/protein/features/nodes/dssp.py 90.12% <100.00%> (+65.44%) :arrow_up:
graphein/_version.py 0.00% <0.00%> (-12.91%) :arrow_down:
... and 8 more

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 42e479d...6aa928b. Read the comment docs.

sonarcloud[bot] commented 2 years ago

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 4 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication