98 #105

What does this implement/fix? Explain your changes

Improves filtering of PDB DF to remove altlocs & insertions more thoroughly.
Pin versions of PyYaml and matplotlib to improve colab installation.

Adds example test for troublesome PDB with lots of insertions & altlocs.

What testing did you do to verify the changes in this PR?

codecov-commenter commented 2 years ago

Codecov Report

Merging #107 (6e65c57) into master (8123f42) will increase coverage by 0.85%. The diff coverage is 70.63%.

@@            Coverage Diff             @@
##           master     #107      +/-   ##
==========================================
+ Coverage   40.27%   41.13%   +0.85%     
==========================================
  Files          48       49       +1     
  Lines        2811     2920     +109     
==========================================
+ Hits         1132     1201      +69     
- Misses       1679     1719      +40

Impacted Files	Coverage Δ
graphein/protein/visualisation.py	`15.65% <0.00%> (-0.57%)`	:arrow_down:
graphein/protein/utils.py	`53.33% <70.00%> (+2.11%)`	:arrow_up:
graphein/protein/subgraphs.py	`73.07% <73.07%> (ø)`
graphein/__init__.py	`100.00% <100.00%> (ø)`
graphein/protein/__init__.py	`84.61% <100.00%> (+1.28%)`	:arrow_up:
graphein/protein/graphs.py	`72.22% <100.00%> (+0.52%)`	:arrow_up:
graphein/_version.py	`0.00% <0.00%> (-12.91%)`	:arrow_down:
graphein/protein/features/sequence/embeddings.py	`34.61% <0.00%> (-1.24%)`	:arrow_down:
graphein/utils/pymol/core.py	`31.74% <0.00%> (-0.52%)`	:arrow_down:
graphein/ml/conversion.py	`0.00% <0.00%> (ø)`
... and 1 more

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