Subgraphs

[a-r-j]

Reference Issues/PRs

104

What does this implement/fix? Explain your changes

Adds secondary structure and surface-based subgraphs & tests. Minor bugfix to RSA calculation where it would fail if it was the only/first DSSP feature computed. Adds GraphConfigurationError exception.

What testing did you do to verify the changes in this PR?

Added tests for the new functions.

[sonarcloud[bot]]

Kudos, SonarCloud Quality Gate passed!   

0 Bugs
0 Vulnerabilities
0 Security Hotspots
0 Code Smells

No Coverage information
0.0% Duplication

[codecov-commenter]

Codecov Report

Merging #110 (48fe654) into heatmap (3de81c7) will increase coverage by 2.33%. The diff coverage is 74.35%.

@@             Coverage Diff             @@
##           heatmap     #110      +/-   ##
===========================================
+ Coverage    38.78%   41.12%   +2.33%     
===========================================
  Files           50       50              
  Lines         3117     3154      +37     
===========================================
+ Hits          1209     1297      +88     
+ Misses        1908     1857      -51     

Impacted Files	Coverage Δ
graphein/protein/features/nodes/amino_acid.py	80.43% <50.00%> (-3.29%)	:arrow_down:
graphein/protein/utils.py	68.00% <60.00%> (+14.66%)	:arrow_up:
graphein/protein/subgraphs.py	73.64% <76.00%> (+0.56%)	:arrow_up:
graphein/protein/features/nodes/dssp.py	90.12% <100.00%> (+65.44%)	:arrow_up:
graphein/protein/graphs.py	74.21% <0.00%> (+0.62%)	:arrow_up:
graphein/utils/utils.py	37.16% <0.00%> (+2.65%)	:arrow_up:

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