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a-r-j / graphein

Protein Graph Library
https://graphein.ai/
MIT License
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update eigenvector computation method #156 #158

Closed a-r-j closed 2 years ago

a-r-j commented 2 years ago

Reference Issues/PRs

156

What does this implement/fix? Explain your changes

Changes eigenvector centrality computation to numpy-based method for improved stability.

sonarcloud[bot] commented 2 years ago

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

codecov-commenter commented 2 years ago

Codecov Report

Merging #158 (95d5d04) into master (8123f42) will increase coverage by 7.63%. The diff coverage is 56.23%.

@@            Coverage Diff             @@
##           master     #158      +/-   ##
==========================================
+ Coverage   40.27%   47.90%   +7.63%     
==========================================
  Files          48       58      +10     
  Lines        2811     3822    +1011     
==========================================
+ Hits         1132     1831     +699     
- Misses       1679     1991     +312
Impacted Files Coverage Δ
graphein/grn/parse_trrust.py 37.77% <ø> (ø)
graphein/ml/diffusion.py 0.00% <0.00%> (ø)
graphein/ppi/edges.py 100.00% <ø> (ø)
graphein/ppi/graph_metadata.py 0.00% <ø> (ø)
graphein/ppi/graphs.py 54.34% <ø> (ø)
graphein/ppi/parse_biogrid.py 75.00% <ø> (ø)
graphein/ppi/visualisation.py 0.00% <0.00%> (ø)
graphein/protein/analysis.py 0.00% <0.00%> (ø)
graphein/protein/features/sequence/sequence.py 71.42% <0.00%> (+2.67%) :arrow_up:
graphein/protein/features/sequence/utils.py 28.00% <0.00%> (+3.00%) :arrow_up:
... and 44 more

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