a-r-j commented 2 years ago

Reference Issues/PRs

Adds dataloaders for the following built in datasets: #13

PROTEINS_METAL
PROTEINS_NUCLEIC
PROTEINS_LIGANDS
PROTEINS_NUCLEOTIDES

What does this implement/fix? Explain your changes

What testing did you do to verify the changes in this PR?

Local testing.

Pull Request Checklist

[ ] Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
[ ] Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
[ ] Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
[ ] Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
[ ] Checked for style issues by running black . and isort .

codecov-commenter commented 2 years ago

Codecov Report

Merging #204 (2db8ce2) into master (8123f42) will increase coverage by 6.56%. The diff coverage is 41.53%.

@@            Coverage Diff             @@
##           master     #204      +/-   ##
==========================================
+ Coverage   40.27%   46.83%   +6.56%     
==========================================
  Files          48       93      +45     
  Lines        2811     5647    +2836     
==========================================
+ Hits         1132     2645    +1513     
- Misses       1679     3002    +1323

Impacted Files	Coverage Δ
graphein/grn/parse_trrust.py	`37.77% <ø> (ø)`
graphein/ml/datasets/proteins_x.py	`0.00% <0.00%> (ø)`
graphein/ml/diffusion.py	`0.00% <0.00%> (ø)`
graphein/ppi/edges.py	`100.00% <ø> (ø)`
graphein/ppi/graph_metadata.py	`0.00% <ø> (ø)`
graphein/ppi/graphs.py	`54.34% <ø> (ø)`
graphein/ppi/parse_biogrid.py	`75.00% <ø> (ø)`
graphein/ppi/visualisation.py	`0.00% <0.00%> (ø)`
graphein/protein/analysis.py	`0.00% <0.00%> (ø)`
graphein/protein/edges/intramolecular.py	`22.68% <0.00%> (ø)`
... and 87 more