Local dataset (#208) - Githubissues

a-r-j / graphein

Protein Graph Library

https://graphein.ai/

MIT License

1.03k stars 131 forks source link

Local dataset (#208) #211

Closed a-r-j closed 2 years ago

a-r-j commented 2 years ago

add load local pdb_files to ProteinGraphDataset
load local pdb_files from a list
test and black and isort and add CHANGELOG.md
docstring formatting
comment jupyter; just run and ssh or vscode to interact with container
install dependency of jupyter nbextension
Fixed Dockerfile and unit tests
Update chage log

Co-authored-by: xutingfeng xutingfeng@big.ac.cn Co-authored-by: Arian Jamasb arjamasb@gmail.com Co-authored-by: ryan ryan.greenhalgh@hotmail.co.uk

Reference Issues/PRs

What does this implement/fix? Explain your changes

What testing did you do to verify the changes in this PR?

Pull Request Checklist

[ ] Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
[ ] Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
[ ] Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
[ ] Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
[ ] Checked for style issues by running black . and isort .

review-notebook-app[bot] commented 2 years ago

Check out this pull request on

See visual diffs & provide feedback on Jupyter Notebooks.

Powered by ReviewNB

sonarcloud[bot] commented 2 years ago

SonarCloud Quality Gate failed.

0 Bugs
0 Vulnerabilities
0 Security Hotspots
0 Code Smells

No Coverage information
40.0% Duplication