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a-slide / NanoCount

EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
https://a-slide.github.io/NanoCount/
MIT License
53 stars 5 forks source link

Setting -3 to -1 to deactivate fails #11

Closed josiegleeson closed 2 years ago

josiegleeson commented 3 years ago

Hello, two comments.

When setting the -3 setting to -1 to deactivate, it throws an error: NanoCount: error: argument -3/--max_dist_3_prime: expected one argument I have been able to deactivate it by just setting the cutoff to a very high number instead.

Also there is a typo in the argument: discard_suplementary As it should be: discard_supplementary

Thank you!

a-slide commented 3 years ago

Hi Josie,

Thanks for reporting the bugs. I will take care of those as soon as I can.

a-slide commented 2 years ago

fix in 1.0