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a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
https://a-slide.github.io/pycoQC/
GNU General Public License v3.0
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min / max length filtering #102

Closed pgtb closed 4 years ago

pgtb commented 4 years ago

First thanks a lot for your nice and useful tool !

I am just asking if is it possible to add a minimum (and maximum) read length as new filtering parameters. Could be useful to get a quick view of what we can real expect for target sequencing; amplicons sequencing etc.

thank you

all the best

a-slide commented 4 years ago

I actually recently added an option for that: --min_pass_len If you update to the latest version (2.5.0.14) it should be there. Cheers

pgtb commented 4 years ago

OK

Thanks a lot for your quick reply !

best

-- Christophe Boury Assistant Ingénieur (Lab Geek) Plateforme Genome Transcriptome de Bordeaux INRA - UMR 1202 BIOGECO 69 route d'Arcachon 33612 Cestas - Pierroton FRANCE

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De : Adrien Leger [mailto:notifications@github.com] Envoyé : mardi 22 octobre 2019 10:15 À : a-slide/pycoQC pycoQC@noreply.github.com Cc : pgtb pgtb@inra.fr; Author author@noreply.github.com Objet : Re: [a-slide/pycoQC] min / max length filtering (#102)

I actually recently added an option for that: --min_pass_len If you update to the latest version (2.5.0.14) it should be there. Cheers

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