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a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
https://a-slide.github.io/pycoQC/
GNU General Public License v3.0
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transcriptome mode for post-alignment QC #108

Open a-slide opened 4 years ago

a-slide commented 4 years ago

Add specific plots and report if the dataset is cDNA or dRNA aligned on a transcriptome reference At the moment the coverage plot doesn't make a lot of sense for RNA

meydaria commented 3 years ago

Hi, I just wanted to add, that for me the "Aligned reads identity" plot is buggy for an direct RNA sample, as it is showing negative values and the density plot doesn't match the quantile information.

alignedReadsIdentity alignedReadsIdentity_zoomed

tleonardi commented 3 years ago

Hi @meydaria, thanks for the report. We will fix this problem with the next release.

tom