AttributeError: 'Series' object has no attribute 'ptp'

[HamletShaoE]

Hi, I am using pycoQC on centOS. I come across a problem. Is there any clue that I may have been doing to wrong? [shaoyi@login02 result]$ pycoQC -f sequencing_summary.txt --outfile pycoQC/pycoQC.html PARSE CONFIGURATION FILE PARSE DATA FILES Import raw data from sequencing summary files 35,885 reads found in initial file Verify fields and discard unused columns 1D Run type Drop lines containing NA values 0 reads discarded Sort run IDs by decreasing throughput Traceback (most recent call last): File "/usr/nzx-cluster/apps/pycoQC/python-scripts/pycoQC", line 12, in sys.exit(main_pycoQC()) File "/usr/nzx-cluster/apps/anaconda3/5.3.1/envs/pycoQC/lib/python3.6/site-packages/pycoQC/cli.py", line 169, in main_pycoQC title=args.title) File "/usr/nzx-cluster/apps/anaconda3/5.3.1/envs/pycoQC/lib/python3.6/site-packages/pycoQC/cli.py", line 196, in generate_report filter_calibration=filter_calibration) File "/usr/nzx-cluster/apps/anaconda3/5.3.1/envs/pycoQC/lib/python3.6/site-packages/pycoQC/pycoQC.py", line 166, in init d[run_id] = len(sdf)/sdf["start_time"].ptp() File "/usr/nzx-cluster/apps/anaconda3/5.3.1/envs/pycoQC/lib/python3.6/site-packages/pandas/core/generic.py", line 5274, in getattr return object.getattribute(self, name) AttributeError: 'Series' object has no attribute 'ptp'

[a-slide]

Hi @HamletShaoE Could you let me know which version of pycoQC you are using ? Thanks

[HamletShaoE]

@a-slide I am using v2.2.3 pycoQC and using Python 3.6 [shaoyi@login02 ~]$ pycoQC --version pycoQC v2.2.3 [shaoyi@login02 ~]$ python Python 3.6.10 |Anaconda, Inc.| (default, Jan 7 2020, 21:14:29)

[a-slide]

Could you open to the last version v2.5.0.21 ? It is now available on bioconda

[a-slide]

Assumed fixed

[HamletShaoE]

Yes, after a more recent version. This problem is solved. Sorry I was into the analysis and forget to reply.

[a-slide]

No worries. Thanks for your feedback. Cheers Ad