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a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
https://a-slide.github.io/pycoQC/
GNU General Public License v3.0
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Can not install pycoQC (version 2.5.0.21) in anaconda #120

Closed xlinxlin closed 4 years ago

xlinxlin commented 4 years ago

Hi!

I have a problem by installing pycoQC (version 2.5.0.21) in an anaconda environment. First it told me "ResolvePackageNotFound"

(nxf-ont) yan@xps13:~$ conda install -c bioconda pycoqc=2.5.0.21
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \ 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed

ResolvePackageNotFound: 
  - tqdm=4.35.0

After I installed it by using command conda install -c conda-forge tqdm=4.35.0 then I ran conda install -c bioconda pycoqc=2.5.0.21 again, but unfortunately failed again:

(nxf-ont) yan@xps13:~$ conda install -c bioconda pycoqc=2.5.0.21
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \ 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                          

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

If I run conda install -c bioconda pycoqc without specific version it will install pycoQC version 2.2.3, but I need 2.5.0.21 because I had the same issue described in https://github.com/a-slide/pycoQC/issues/112

OS: Ubuntu 16.04

Could you help me with this? Thanks a lot!

xlinxlin commented 4 years ago

The environment was created by using the command conda create -n nxf-ont python=3.6

xlinxlin commented 4 years ago

I have also tried with the channel aleg

(nxf-ont) yan@xps13:~$ conda install -c aleg pycoqc=2.5.0.21
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: - 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                          

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions
a-slide commented 4 years ago

Hi @xlinxlin,

I assume conda forge and bioconda are not in your default conda repositories ?

Can you try the following in a newly created clean python 3.6 or 3.7 environment: conda install -c aleg -c conda-forge -c bioconda pycoqc=2.5.0.21

Otherwise, just try with pip instead

xlinxlin commented 4 years ago

Hi @xlinxlin,

I assume conda forge and bioconda are not in your default conda repositories ?

Can you try the following in a newly created clean python 3.6 or 3.7 environment: conda install -c aleg -c conda-forge -c bioconda pycoqc=2.5.0.21

Otherwise, just try with pip instead

With your command it works,, thanks!