pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
I am having the following error when installing the tool:
$pip install git+https://github.com/a-slide/pycoQC.git
Collecting git+https://github.com/a-slide/pycoQC.git
Cloning https://github.com/a-slide/pycoQC.git to /localData/000scratch/pip-req-build-eziog0hw
Running command git clone -q https://github.com/a-slide/pycoQC.git /localData/000scratch/pip-req-build-eziog0hw
ERROR: Command errored out with exit status 1:
command: /home/me/.conda/envs/pycoQC/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/localData/000scratch/pip-req-build-eziog0hw/setup.py'"'"'; __file__='"'"'/localData/000scratch/pip-req-build-eziog0hw/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /localData/000scratch/pip-req-build-eziog0hw/pip-egg-info
cwd: /localData/000scratch/pip-req-build-eziog0hw/
Complete output (7 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/localData/000scratch/pip-req-build-eziog0hw/setup.py", line 8, in <module>
long_description = fh.read()
File "/home/curtin_kristinag/.conda/envs/pycoQC/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xc2 in position 4994: ordinal not in range(128)
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
I run it on my HPC cluster, inside the conda environment. I installed it as you describe in the installation instructions here. Do you have any suggestions?
Hi,
I am having the following error when installing the tool:
I run it on my HPC cluster, inside the conda environment. I installed it as you describe in the installation instructions here. Do you have any suggestions?
I tried the following but it doesn't work
Thank you in advance