Open dlbowie0 opened 6 months ago
command line used : pycoQC -f seq_summary.txt -a goi.bam -o output_pycoqc.html
pycoQC -f seq_summary.txt -a goi.bam -o output_pycoqc.html
After executing this ommand line in the pipeline, two of all the graphs produced by pycoQC are empty:
When I checked the .command.err file, the following error was stated:
Numpy version installed == 1.26.4
Below you can find where in the pycoQC pcode `np.int' is stated: https://github.com/a-slide/pycoQC/blob/183711e794748c1f8b83ac96ce9e6fa402625bb8/pycoQC/pycoQC_plot.py#L1427 z = np.ones((len(bins), n_channels), dtype=np.int)
command line used :
pycoQC -f seq_summary.txt -a goi.bam -o output_pycoqc.html
After executing this ommand line in the pipeline, two of all the graphs produced by pycoQC are empty:
When I checked the .command.err file, the following error was stated:
Numpy version installed == 1.26.4
Below you can find where in the pycoQC pcode `np.int' is stated: https://github.com/a-slide/pycoQC/blob/183711e794748c1f8b83ac96ce9e6fa402625bb8/pycoQC/pycoQC_plot.py#L1427 z = np.ones((len(bins), n_channels), dtype=np.int)