Closed sklages closed 4 months ago
There are quite significant discrepancies between pycoQC and ToulligQC numbers and plots (based on pass data) when run on the same dataset.
That is probably due to the definition of "pass" for a read, that will most likely influence (all) subsequent calculations based on "pass" reads.
Can you provide a definition of what it needs for a read to be considered "pass" by pycoQC?
There are quite significant discrepancies between pycoQC and ToulligQC numbers and plots (based on pass data) when run on the same dataset.
That is probably due to the definition of "pass" for a read, that will most likely influence (all) subsequent calculations based on "pass" reads.
Can you provide a definition of what it needs for a read to be considered "pass" by pycoQC?