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a2iEditing / RNAEditingIndexer

A tool for the calculation of RNA-editing index for RNA seq data
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Trouble with installation configure.sh #14

Open Salvobioinfo opened 4 years ago

Salvobioinfo commented 4 years ago

Hi, I'm trying to install RNA Editing Indexer via instruction provide, but when i run ./configure.sh, something with Bam Utils happens.

BEDTools Path Executable Test - Succeeded
BEDTools Version Test - Succeeded
SAMTools Path Executable Test - Succeeded
SAMTools Version Test - Succeeded
BAM Utils Path Executable Test - Succeeded
BAM Utils Run Test - Failed
**Could Not Run BAM Utils help**
Java Path Executable Test - Succeeded
Java Run Test - Succeeded (java.version = 1.8.0)
Python 2.7 Path Executable Test - Succeeded
Python 2.7 Version Test - Succeeded
Failed On Tests, Exiting...

BamUtils is installed on our system, so i completely don't know what is the issue. Best, Salvo.

shalomhillelroth commented 4 years ago

Hi,

I apologise for the very belayed answer, with the COVID19 happening I have very limited computer access.

Can you please elaborate more? (install command, system configurations, etc.)?

Best

Shalom Hillel Roth