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a2iEditing / RNAEditingIndexer

A tool for the calculation of RNA-editing index for RNA seq data
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bedtoolspath error #21

Open Juliaae opened 4 years ago

Juliaae commented 4 years ago

Hello, I got an error with bedtoolspath error. I use the bedtools version whith 2.28(>2.26), but it told me No option 'bedtoolspath' in section: 'DEFAULT'. Traceback (most recent call last): File "Tools/EditingIndex/A2IEditingIndex.py", line 1341, in File "Tools/EditingIndex/A2IEditingIndex.py", line 1071, in main File "Tools/EditingIndex/A2IEditingIndex.py", line 1007, in load_resources_paths File "ConfigParser.py", line 618, in get ConfigParser.NoOptionError: No option 'bedtoolspath' in section: 'DEFAULT' [42410] Failed to execute script A2IEditingIndex

Joey-xty commented 2 years ago

I have the same issue with you, have you solved it later?

aramanaccent commented 1 year ago

@shalomhillelroth I am having the same error too! If you have any ideas how to fix this please let me know. I am using samtools=1.9 bedtools=2.27.1 bamutil=1.0.14 && cyclus java-jdk=8.0.92 python=2.7.17