Improve general performance using caching and pre-processing

aalto-ics-kepaco / msms_rt_ssvm

Implementation of the LC-MS²Struct model published in the manuscript "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data" by Bach et al.

MIT License

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Improve general performance using caching and pre-processing #4

Open bachi55 opened 3 years ago

bachi55 commented 3 years ago

Here we collect a list of "code-corners" where we can improve the performance using result caching and pre-processing

LabeledSequence

pre-compute the index of the correct structure
pre-load the label spaces for all sequence elements