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aamaricci / SciFortran

A library of fortran modules and routines for scientific calculations (*in a way* just like scipy for python)
GNU Lesser General Public License v3.0
160 stars 39 forks source link

Error applying patch zdotc.patch #9

Closed Beliavsky closed 2 years ago

Beliavsky commented 2 years ago

Using WSL, I get the following error when running cmake ..

pwd
/mnt/c/fortran/public_domain/github/SciFortran/build
cmake ..
-- OS: Linux 5.10.43.3-microsoft-standard-WSL2
-- BUILD_TYPE=RELEASE
-- Fortran Compiler id   = GNU
-- Fortran Compiler ver. = 9.3.0
-- Fortran Compiler options = -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch -O3   -funroll-loops
-- Set Fortran compiler FC to /usr/bin/mpif90, ID=GNU
-- Git SHA1: 8c2a7fe1aa1d7e7a935996e36ceb7bb81f6ff4fc
-- Git branch: master
-- Git tag: 4.7.3-1-g8c2a7fe
-- BLAS/LAPACK found at: /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so;/usr/lib/x86_64-linux-gnu/libopenblas.so
-- Finding SCALAPACK
-- Testing P-ARPACK patch: zdotc.patch
-- Patch not applied. Applying: zdotc.patch
CMake Error at src/arpack/CMakeLists.txt:215 (MESSAGE):
  Error applying patch zdotc.patch

-- Configuring incomplete, errors occurred!
See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeError.log".
aamaricci commented 2 years ago

Never happened so far. What is the system? What is in the cmake logs? Can it be patch is not installed in the system?

Cheers A

Il giorno ven 3 set 2021 alle 18:26 Beliavsky @.***> ha scritto:

Using WSL, I get the following error when running cmake ..

pwd /mnt/c/fortran/public_domain/github/SciFortran/build cmake .. -- OS: Linux 5.10.43.3-microsoft-standard-WSL2 -- BUILD_TYPE=RELEASE -- Fortran Compiler id = GNU -- Fortran Compiler ver. = 9.3.0 -- Fortran Compiler options = -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch -O3 -funroll-loops -- Set Fortran compiler FC to /usr/bin/mpif90, ID=GNU -- Git SHA1: 8c2a7fe1aa1d7e7a935996e36ceb7bb81f6ff4fc -- Git branch: master -- Git tag: 4.7.3-1-g8c2a7fe -- BLAS/LAPACK found at: /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so;/usr/lib/x86_64-linux-gnu/libopenblas.so -- Finding SCALAPACK -- Testing P-ARPACK patch: zdotc.patch -- Patch not applied. Applying: zdotc.patch CMake Error at src/arpack/CMakeLists.txt:215 (MESSAGE): Error applying patch zdotc.patch

-- Configuring incomplete, errors occurred! See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeOutput.log". See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeError.log".

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lcrippa commented 2 years ago

I have seen this problem somewhere else for the Windows subsystem for Linux (which I assume it's what we intend here by WSL). The issue could be that there is no "patch" tool installed, hence zdotc.patch cannot be applied. If this is the issue, you might be able to solve it by sudo apt update && sudo apt install patch (but first check if the patch command is indeed missing)

Beliavsky commented 2 years ago

Yes, WSL = Windows Subsystem for Linux. I installed patch as suggested but still get the same error message when trying cmake .. . The content of CMakeError.log is

Determining if the Fortran sgemm exists failed with the following output:
Change Dir: /mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_f2ec5/fast && make: Warning: File 'Makefile' has modification time 2.2 s in the future
/usr/bin/make -f CMakeFiles/cmTC_f2ec5.dir/build.make CMakeFiles/cmTC_f2ec5.dir/build
make[1]: Entering directory '/mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp'
make[1]: Warning: File 'CMakeFiles/cmTC_f2ec5.dir/flags.make' has modification time 2.2 s in the future
Building Fortran object CMakeFiles/cmTC_f2ec5.dir/testFortranCompiler.f.o
/usr/bin/f95   -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch    -c /mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_f2ec5.dir/testFortranCompiler.f.o
Linking Fortran executable cmTC_f2ec5
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_f2ec5.dir/link.txt --verbose=1
/usr/bin/f95    -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch  CMakeFiles/cmTC_f2ec5.dir/testFortranCompiler.f.o  -o cmTC_f2ec5 
/usr/bin/ld: CMakeFiles/cmTC_f2ec5.dir/testFortranCompiler.f.o: in function `MAIN__':
testFortranCompiler.f:(.text+0xa): undefined reference to `sgemm_'
collect2: error: ld returned 1 exit status
make[1]: *** [CMakeFiles/cmTC_f2ec5.dir/build.make:87: cmTC_f2ec5] Error 1
make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp'
make: *** [Makefile:121: cmTC_f2ec5/fast] Error 2

The content of CMakeOutput.log is

The system is: Linux - 5.10.43.3-microsoft-standard-WSL2 - x86_64
Compiling the Fortran compiler identification source file "CMakeFortranCompilerId.F" succeeded.
Compiler: /usr/bin/f95 
Build flags: 
Id flags: -v 

The output was:
0
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Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
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#include "..." search starts here:
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 /usr/lib/gcc/x86_64-linux-gnu/9/finclude
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GNU Fortran2008 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
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Run Build Command(s):/usr/bin/make cmTC_8a235/fast && make: Warning: File 'Makefile' has modification time 2.2 s in the future
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make[1]: Entering directory '/mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp'
make[1]: Warning: File 'CMakeFiles/cmTC_8a235.dir/flags.make' has modification time 2.2 s in the future
Building Fortran object CMakeFiles/cmTC_8a235.dir/testFortranCompiler.f.o
/usr/bin/f95   -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch    -c /mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_8a235.dir/testFortranCompiler.f.o
Linking Fortran executable cmTC_8a235
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_8a235.dir/link.txt --verbose=1
/usr/bin/f95    -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch  CMakeFiles/cmTC_8a235.dir/testFortranCompiler.f.o  -o cmTC_8a235  /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so 
make[1]: warning:  Clock skew detected.  Your build may be incomplete.
make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/scifortran/build/CMakeFiles/CMakeTmp'
make: warning:  Clock skew detected.  Your build may be incomplete.
aamaricci commented 2 years ago

You probably have to wipe out the build dir. and restart from scratch. Cmake needs to reconfigure.

A

Il giorno sab 4 set 2021 alle 12:54 Beliavsky @.***> ha scritto:

Yes, WSL = Windows Subsystem for Linux. I installed patch as suggested but still get the same error message when trying cmake .. .

— You are receiving this because you commented.

Reply to this email directly, view it on GitHub https://github.com/QcmPlab/SciFortran/issues/9#issuecomment-912953336, or unsubscribe https://github.com/notifications/unsubscribe-auth/AARRDWCB7KYODASGFPISRB3UAH3EZANCNFSM5DMCQYJA .

Beliavsky commented 2 years ago

I deleted scifortran, downloaded again, did mkdir build and cd build, and then cmake .. .

cmake ..
-- The Fortran compiler identification is GNU 9.3.0
-- Check for working Fortran compiler: /usr/bin/f95
-- Check for working Fortran compiler: /usr/bin/f95  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/f95 supports Fortran 90
-- Checking whether /usr/bin/f95 supports Fortran 90 -- yes
-- OS: Linux 5.10.43.3-microsoft-standard-WSL2
-- BUILD_TYPE=RELEASE
-- Fortran Compiler id   = GNU
-- Fortran Compiler ver. = 9.3.0
-- Fortran Compiler options = -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch -O3   -funroll-loops
-- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Set Fortran compiler FC to /usr/bin/mpif90, ID=GNU
-- Found Git: /usr/bin/git (found version "2.25.1") 
-- Git SHA1: 8c2a7fe1aa1d7e7a935996e36ceb7bb81f6ff4fc
-- Git branch: master
-- Git tag: 4.7.3-1-g8c2a7fe
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so  
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- BLAS/LAPACK found at: /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so;/usr/lib/x86_64-linux-gnu/libopenblas.so
-- Finding SCALAPACK
-- Testing P-ARPACK patch: zdotc.patch
-- Patch not applied. Applying: zdotc.patch
CMake Error at src/arpack/CMakeLists.txt:215 (MESSAGE):
  Error applying patch zdotc.patch

-- Configuring incomplete, errors occurred!
See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeOutput.log".
See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeError.log".
cat CMakeError.log
Determining if the Fortran sgemm exists failed with the following output:
Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_03020/fast && /usr/bin/make -f CMakeFiles/cmTC_03020.dir/build.make CMakeFiles/cmTC_03020.dir/build
make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'
Building Fortran object CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o
/usr/bin/f95   -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch    -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o
Linking Fortran executable cmTC_03020
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_03020.dir/link.txt --verbose=1
/usr/bin/f95    -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch  CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o  -o cmTC_03020 
/usr/bin/ld: CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o: in function `MAIN__':
testFortranCompiler.f:(.text+0xa): undefined reference to `sgemm_'
collect2: error: ld returned 1 exit status
make[1]: *** [CMakeFiles/cmTC_03020.dir/build.make:87: cmTC_03020] Error 1
make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'
make: *** [Makefile:121: cmTC_03020/fast] Error 2
cat CMakeOutput.log
The system is: Linux - 5.10.43.3-microsoft-standard-WSL2 - x86_64
Compiling the Fortran compiler identification source file "CMakeFortranCompilerId.F" succeeded.
Compiler: /usr/bin/f95 
Build flags: 
Id flags: -v 

The output was:
0
Driving: /usr/bin/f95 -v CMakeFortranCompilerId.F -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/f95
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/f951 CMakeFortranCompilerId.F -ffixed-form -cpp=/tmp/cc2HRlDN.f90 -quiet -v -imultiarch x86_64-linux-gnu CMakeFortranCompilerId.F -quiet -dumpbase CMakeFortranCompilerId.F -mtune=generic -march=x86-64 -auxbase CMakeFortranCompilerId -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/9/finclude -fpre-include=/usr/include/finclude/math-vector-fortran.h -o /tmp/ccjjfSNL.s
GNU Fortran (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
    compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
 /usr/lib/gcc/x86_64-linux-gnu/9/finclude
 /usr/lib/gcc/x86_64-linux-gnu/9/include
 /usr/local/include
 /usr/include/x86_64-linux-gnu
 /usr/include
End of search list.
GNU Fortran2008 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
    compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 as -v --64 -o /tmp/ccPvse4L.o /tmp/ccjjfSNL.s
GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/cccCZ9aL.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/ccPvse4L.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'

Compilation of the Fortran compiler identification source "CMakeFortranCompilerId.F" produced "a.out"

The Fortran compiler identification is GNU, found in "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/3.16.3/CompilerIdFortran/a.out"

Determining if the Fortran compiler works passed with the following output:
Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_4fcb5/fast && /usr/bin/make -f CMakeFiles/cmTC_4fcb5.dir/build.make CMakeFiles/cmTC_4fcb5.dir/build
make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'
Building Fortran object CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o
/usr/bin/f95    -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o
Linking Fortran executable cmTC_4fcb5
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_4fcb5.dir/link.txt --verbose=1
/usr/bin/f95      CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o  -o cmTC_4fcb5 
make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'

Detecting Fortran compiler ABI info compiled with the following output:
Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_72c1e/fast && /usr/bin/make -f CMakeFiles/cmTC_72c1e.dir/build.make CMakeFiles/cmTC_72c1e.dir/build
make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'
Building Fortran object CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o
/usr/bin/f95   -v -c /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -o CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o
Using built-in specs.
COLLECT_GCC=/usr/bin/f95
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COLLECT_GCC_OPTIONS='-v' '-c' '-o' 'CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/f951 /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -ffixed-form -cpp=/tmp/ccZtPNdz.f90 -quiet -v -imultiarch x86_64-linux-gnu /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -quiet -dumpbase CMakeFortranCompilerABI.F -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/9/finclude -fpre-include=/usr/include/finclude/math-vector-fortran.h -o /tmp/ccyNUdIB.s
GNU Fortran (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
    compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
 /usr/lib/gcc/x86_64-linux-gnu/9/finclude
 /usr/lib/gcc/x86_64-linux-gnu/9/include
 /usr/local/include
 /usr/include/x86_64-linux-gnu
 /usr/include
End of search list.
GNU Fortran2008 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
    compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
COLLECT_GCC_OPTIONS='-v' '-c' '-o' 'CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o' '-mtune=generic' '-march=x86-64'
 as -v --64 -o CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o /tmp/ccyNUdIB.s
GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-c' '-o' 'CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o' '-mtune=generic' '-march=x86-64'
Linking Fortran executable cmTC_72c1e
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_72c1e.dir/link.txt --verbose=1
/usr/bin/f95   -v   CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o  -o cmTC_72c1e 
Driving: /usr/bin/f95 -v CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o -o cmTC_72c1e -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=/usr/bin/f95
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_72c1e' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
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/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2fec4.dir/link.txt --verbose=1
/usr/bin/f95    -cpp -ffree-line-length-none -fPIC -w  -Wno-argument-mismatch  CMakeFiles/cmTC_2fec4.dir/testFortranCompiler.f.o  -o cmTC_2fec4  /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so 
make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'
aamaricci commented 2 years ago

Can you try:

$export FC=gfortran Assuming you have it installed with gcc, test it first. Only then run cmake. The error seems related to f95 compiler (default in Linux)

A

Il giorno sab 4 set 2021 alle 13:12 Beliavsky @.***> ha scritto:

I deleted scifortran, downloaded again, did mkdir build and cd build, and then cmake .. .

cmake .. -- The Fortran compiler identification is GNU 9.3.0 -- Check for working Fortran compiler: /usr/bin/f95 -- Check for working Fortran compiler: /usr/bin/f95 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 -- yes -- OS: Linux 5.10.43.3-microsoft-standard-WSL2 -- BUILD_TYPE=RELEASE -- Fortran Compiler id = GNU -- Fortran Compiler ver. = 9.3.0 -- Fortran Compiler options = -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch -O3 -funroll-loops -- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Set Fortran compiler FC to /usr/bin/mpif90, ID=GNU -- Found Git: /usr/bin/git (found version "2.25.1") -- Git SHA1: 8c2a7fe1aa1d7e7a935996e36ceb7bb81f6ff4fc -- Git branch: master -- Git tag: 4.7.3-1-g8c2a7fe -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- BLAS/LAPACK found at: /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so;/usr/lib/x86_64-linux-gnu/libopenblas.so -- Finding SCALAPACK -- Testing P-ARPACK patch: zdotc.patch -- Patch not applied. Applying: zdotc.patch CMake Error at src/arpack/CMakeLists.txt:215 (MESSAGE): Error applying patch zdotc.patch

-- Configuring incomplete, errors occurred! See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeOutput.log". See also "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeError.log".

cat CMakeError.log Determining if the Fortran sgemm exists failed with the following output: Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_03020/fast && /usr/bin/make -f CMakeFiles/cmTC_03020.dir/build.make CMakeFiles/cmTC_03020.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_03020 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_03020.dir/link.txt --verbose=1 /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o -o cmTC_03020 /usr/bin/ld: CMakeFiles/cmTC_03020.dir/testFortranCompiler.f.o: in function MAIN__': testFortranCompiler.f:(.text+0xa): undefined reference tosgemm_' collect2: error: ld returned 1 exit status make[1]: [CMakeFiles/cmTC_03020.dir/build.make:87: cmTC_03020] Error 1 make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' make: [Makefile:121: cmTC_03020/fast] Error 2

cat CMakeOutput.log The system is: Linux - 5.10.43.3-microsoft-standard-WSL2 - x86_64 Compiling the Fortran compiler identification source file "CMakeFortranCompilerId.F" succeeded. Compiler: /usr/bin/f95 Build flags: Id flags: -v

The output was: 0 Driving: /usr/bin/f95 -v CMakeFortranCompilerId.F -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/bin/f95 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/9/f951 CMakeFortranCompilerId.F -ffixed-form -cpp=/tmp/cc2HRlDN.f90 -quiet -v -imultiarch x86_64-linux-gnu CMakeFortranCompilerId.F -quiet -dumpbase CMakeFortranCompilerId.F -mtune=generic -march=x86-64 -auxbase CMakeFortranCompilerId -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/9/finclude -fpre-include=/usr/include/finclude/math-vector-fortran.h -o /tmp/ccjjfSNL.s GNU Fortran (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu) compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"

include "..." search starts here:

include <...> search starts here:

/usr/lib/gcc/x86_64-linux-gnu/9/finclude /usr/lib/gcc/x86_64-linux-gnu/9/include /usr/local/include /usr/include/x86_64-linux-gnu /usr/include End of search list. GNU Fortran2008 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu) compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64' as -v --64 -o /tmp/ccPvse4L.o /tmp/ccjjfSNL.s GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/9/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/cccCZ9aL.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. /tmp/ccPvse4L.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'

Compilation of the Fortran compiler identification source "CMakeFortranCompilerId.F" produced "a.out"

The Fortran compiler identification is GNU, found in "/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/3.16.3/CompilerIdFortran/a.out"

Determining if the Fortran compiler works passed with the following output: Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_4fcb5/fast && /usr/bin/make -f CMakeFiles/cmTC_4fcb5.dir/build.make CMakeFiles/cmTC_4fcb5.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o /usr/bin/f95 -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_4fcb5 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_4fcb5.dir/link.txt --verbose=1 /usr/bin/f95 CMakeFiles/cmTC_4fcb5.dir/testFortranCompiler.f.o -o cmTC_4fcb5 make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'

Detecting Fortran compiler ABI info compiled with the following output: Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_72c1e/fast && /usr/bin/make -f CMakeFiles/cmTC_72c1e.dir/build.make CMakeFiles/cmTC_72c1e.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o /usr/bin/f95 -v -c /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -o CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o Using built-in specs. COLLECT_GCC=/usr/bin/f95 OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) COLLECT_GCC_OPTIONS='-v' '-c' '-o' 'CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/9/f951 /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -ffixed-form -cpp=/tmp/ccZtPNdz.f90 -quiet -v -imultiarch x86_64-linux-gnu /usr/share/cmake-3.16/Modules/CMakeFortranCompilerABI.F -quiet -dumpbase CMakeFortranCompilerABI.F -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_72c1e.dir/CMakeFortranCompilerABI.F.o -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/9/finclude -fpre-include=/usr/include/finclude/math-vector-fortran.h -o /tmp/ccyNUdIB.s GNU Fortran (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu) compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"

include "..." search starts here:

include <...> search starts here:

/usr/lib/gcc/x86_64-linux-gnu/9/finclude /usr/lib/gcc/x86_64-linux-gnu/9/include /usr/local/include /usr/include/x86_64-linux-gnu /usr/include End of search list. GNU Fortran2008 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu) compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

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Parsed Fortran implicit include dir info from above output: rv=done found start of include info found start of implicit include info add: [/usr/lib/gcc/x86_64-linux-gnu/9/finclude] add: [/usr/lib/gcc/x86_64-linux-gnu/9/include] add: [/usr/local/include] add: [/usr/include/x86_64-linux-gnu] add: [/usr/include] end of search list found collapse include dir [/usr/lib/gcc/x86_64-linux-gnu/9/finclude] ==> [/usr/lib/gcc/x86_64-linux-gnu/9/finclude] collapse include dir [/usr/lib/gcc/x86_64-linux-gnu/9/include] ==> [/usr/lib/gcc/x86_64-linux-gnu/9/include] collapse include dir [/usr/local/include] ==> [/usr/local/include] collapse include dir [/usr/include/x86_64-linux-gnu] ==> [/usr/include/x86_64-linux-gnu] collapse include dir [/usr/include] ==> [/usr/include] implicit include dirs: [/usr/lib/gcc/x86_64-linux-gnu/9/finclude;/usr/lib/gcc/x86_64-linux-gnu/9/include;/usr/local/include;/usr/include/x86_64-linux-gnu;/usr/include]

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Run Build Command(s):/usr/bin/make cmTC_374da/fast && /usr/bin/make -f CMakeFiles/cmTC_374da.dir/build.make CMakeFiles/cmTC_374da.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_374da.dir/testFortranCompilerF90.f90.o /usr/bin/f95 -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompilerF90.f90 -o CMakeFiles/cmTC_374da.dir/testFortranCompilerF90.f90.o Linking Fortran executable cmTC_374da /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_374da.dir/link.txt --verbose=1 /usr/bin/f95 CMakeFiles/cmTC_374da.dir/testFortranCompilerF90.f90.o -o cmTC_374da make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'

Determining if the Fortran sgemm exists passed with the following output: Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_dea80/fast && /usr/bin/make -f CMakeFiles/cmTC_dea80.dir/build.make CMakeFiles/cmTC_dea80.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_dea80.dir/testFortranCompiler.f.o /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_dea80.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_dea80 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_dea80.dir/link.txt --verbose=1 /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch CMakeFiles/cmTC_dea80.dir/testFortranCompiler.f.o -o cmTC_dea80 /usr/lib/x86_64-linux-gnu/libopenblas.so make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'

Determining if the Fortran cheev exists passed with the following output: Change Dir: /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_2fec4/fast && /usr/bin/make -f CMakeFiles/cmTC_2fec4.dir/build.make CMakeFiles/cmTC_2fec4.dir/build make[1]: Entering directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp' Building Fortran object CMakeFiles/cmTC_2fec4.dir/testFortranCompiler.f.o /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch -c /mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp/testFortranCompiler.f -o CMakeFiles/cmTC_2fec4.dir/testFortranCompiler.f.o Linking Fortran executable cmTC_2fec4 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2fec4.dir/link.txt --verbose=1 /usr/bin/f95 -cpp -ffree-line-length-none -fPIC -w -Wno-argument-mismatch CMakeFiles/cmTC_2fec4.dir/testFortranCompiler.f.o -o cmTC_2fec4 /usr/lib/x86_64-linux-gnu/libopenblas.so /usr/lib/x86_64-linux-gnu/libopenblas.so make[1]: Leaving directory '/mnt/c/fortran/public_domain/github/SciFortran/build/CMakeFiles/CMakeTmp'

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Beliavsky commented 2 years ago

I tried export FC=gfortran but still get the same error when trying cmake .. . Thanks to both of you for your suggestions. I will try posting on Fortran Discourse to see if others are able to use the project in WSL.

Beliavsky commented 2 years ago

I just installed the latest version of SciFortran, and now I am able to compile it on WSL. Thanks! Since my last attempt I upgraded to Windows Subsystem for Linux GUI. I don't know if that made a difference.

lcrippa commented 2 years ago

That's really good news, especially from a cross-platform perspective. I don't think the GUI is responsible for the bugfix, my money would be on commit cf3c7d245198e551f60f06f17df233da5a57cce5 to have provided the fix, since path issues in WSL are not unheard of. Of course the final confirmation would have to come from a cross-check with an older version of SciFortran, but I would say it's not so relevant now, the issue can probably be closed