Closed jiangshuyang123 closed 3 months ago
Upload genome处应上传完整基因组文件,你上传的是一些LTR序列文件。
直接引发错误的原因是,序列的ID中包含/
,在后续分割操作中会以序列ID创建分割文件,系统中不允许文件名中包含/
(会识别为目录)。
非常感谢您的回复,我还想问一下我想看我的LTR的bed文件里的着丝粒情况用咱们的软件无法实现是吗
着丝粒是染色体上一个较大的区域。LTR是很小的一段序列,可能是着丝粒的一部分,LTR中不存在“着丝粒情况”。
好的,我明白了,非常感谢您的解答
[Error] Unexcepted error occur as follow: [Info] Paramater: genomefile=../../upload/04990c39-88b5-4f49-8aa5-8fe29b83f4c0_output_filehs1.fa.mod.LTR.intact.fa.ori.fasta tegfffile=../../upload/3437eeee-d2d8-48d2-bd1f-33fb16c072dc_hs1.fa.mod.LTR.intact.gff3 minperiod=75 maxperiod=300 e=1e-05 maxgap=80000 minlength=50000 prefix=quarTeT threads=1 overwrite=True match=2 mismatch=7 delta=7 PctMatch=80 PctIndel=10 minscore=50 identity=0.8 periodmaxdelta=10 wordlength=5 [Info] Spliting genome to chromosome... Traceback (most recent call last): File "/var/www/html/t2t/bioRepository/exec/server/../quartet_centrominer.py" line 291 in
quartet_util.run(centroMiner
args)
File "/var/www/html/t2t/bioRepository/exec/quartet_util.py"
line 11
in run
func(args)
File "/var/www/html/t2t/bioRepository/exec/server/../quartet_centrominer.py"
line 26
in centroMiner
with open(splitchrfastafile
'w') as Chrfasta:
FileNotFoundError: [Errno 2] No such file or directory: 'tmp/splitchr/quarTeT.chr1:6447350..6449665#LTR/unknown.fasta'
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