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aaranyue / quarTeT

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
http://atcgn.com:8080/quarTeT/home.html
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About references guided assemble #2

Closed xiekunwhy closed 5 months ago

xiekunwhy commented 1 year ago

Hi,

  1. Can I use hifiasm p_ctg + hic anchor result as reference genome when using AssemblyMapper ? It is very hard to get a close-related reference genome when assembling some "new" species.
  2. What assemble level of reference genome is required ? Gap free T2T ?

Best, Kun

Echoring commented 1 year ago

It's good to use hic anchored scafford as reference. We used the same stat. Reference genome can be any, even not a genome such as hic scafford.

xiekunwhy commented 1 year ago

Ok, I will try it, thank you for your reply!