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ababaian / LIONS

LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
GNU General Public License v3.0
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Example Data #3

Closed ababaian closed 5 years ago

ababaian commented 5 years ago

We need to initialize an 'example' data-set which can be run quickly within a docker container have a deployable and working version of the pipeline people can play with (the whole pipeline working). Still haven't decided what that's going to look like exactly but here's what we have so far in place.

System Control Files

I've initialized some example paramter control files

Example Resource Files

??

Example Data Files

biscuit13161 commented 5 years ago

Hi Artem,

I thought that was the point of the Ref-Ready dockerFile I put together....?

Best, Rich

On Mon, 30 Jul 2018, 21:19 Artem Babaian <notifications@github.com wrote:

We need to initialize an 'example' data-set which can be run quickly within a docker container have a deployable and working version of the pipeline people can play with (the whole pipeline working). Still haven't decided what that's going to look like exactly but here's what we have so far in place. System Control Files

I've initialized some example paramter control files

  • $LIONS/controls/docker_test.ctrl
  • $LIONS/controls/docker.sysctrl

Example Resource Files

?? Example Data Files

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/ababaian/LIONS/issues/3, or mute the thread https://github.com/notifications/unsubscribe-auth/AARLf8UoDaZjBzDrbDiTgepQ4KqJz2eMks5uL04ygaJpZM4Vm6pY .

biscuit13161 commented 5 years ago

Hi Artem,

Sorry, ignore my last email ... new phone confusing me! ☺

Best, Rich

On Sun, 27 Jan 2019, 14:43 Richard Thompson <bawan03@gmail.com wrote:

Hi Artem,

I thought that was the point of the Ref-Ready dockerFile I put together....?

Best, Rich

On Mon, 30 Jul 2018, 21:19 Artem Babaian <notifications@github.com wrote:

We need to initialize an 'example' data-set which can be run quickly within a docker container have a deployable and working version of the pipeline people can play with (the whole pipeline working). Still haven't decided what that's going to look like exactly but here's what we have so far in place. System Control Files

I've initialized some example paramter control files

  • $LIONS/controls/docker_test.ctrl
  • $LIONS/controls/docker.sysctrl

Example Resource Files

?? Example Data Files

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/ababaian/LIONS/issues/3, or mute the thread https://github.com/notifications/unsubscribe-auth/AARLf8UoDaZjBzDrbDiTgepQ4KqJz2eMks5uL04ygaJpZM4Vm6pY .