rcedgar
commented
4 years ago The container source is here including sumzer.py and Dockerfile:
s3://serratus-public/rce/mprot/container/
The reference mega-proteome and other miscellany are in this tarball, which the container fetches during load:
The reference is out/mprot.fa in the tarball.
This is all very preliminary and -- please note -- subject to change.
Diamond is much more sensitive to distant Covs than bowtie2, has similar execution speed and runs in well under 1Gb memory. See benchmark results in notebook/2000605_rce_diamond.