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ababaian / serratus

Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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scRNA-seq analysis with Serratus #274

Closed malonzm1 closed 1 year ago

malonzm1 commented 1 year ago

Hi,

I'm performing Serratus/Tantalus analysis with scRNA-seq data. Each sample/fastq file consists of several cells. What I'd like to do is to map the output viral info to an individual cell. Is this possible?

Thanks and good day.

ababaian commented 1 year ago

The aligned reads are retained in the .bam or .pro alignment file, but those contain only biological and not technical sequences. Most likely you would have to go back to the original sequencing dataset and re-process it to single cells and analyze them again.

Serratus is not set-up or intended to work with scRNAseq data, you can try Vulture, although I've never used it.