Closed taltman closed 4 years ago
Doubt of much value to us because auN is for longer genomes with many contigs, my guess is that with viruses we'll typically get 1, 2 or 3 contigs.
Update: Per @hussius "For the low-coverage case, the assembly is more fragmented (I think 37 contigs) so while the contigs (link) do span most of the presumable target genome, there are quite a few gaps." so my prediction was wrong by an order of magnitude. At least it was falsifiable! That's good science right there.
Good to close for now?
This is closed by the use of checkV
#100
See full description here: http://lh3.github.io/2020/04/08/a-new-metric-on-assembly-contiguity