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ababaian / serratus

Ultra-deep search for novel viruses
http://serratus.io
GNU General Public License v3.0
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Incorporate auN metric from Heng Li #93

Closed taltman closed 4 years ago

taltman commented 4 years ago

See full description here: http://lh3.github.io/2020/04/08/a-new-metric-on-assembly-contiguity

rcedgar commented 4 years ago

Doubt of much value to us because auN is for longer genomes with many contigs, my guess is that with viruses we'll typically get 1, 2 or 3 contigs.

Update: Per @hussius "For the low-coverage case, the assembly is more fragmented (I think 37 contigs) so while the contigs (link) do span most of the presumable target genome, there are quite a few gaps." so my prediction was wrong by an order of magnitude. At least it was falsifiable! That's good science right there.

ababaian commented 4 years ago

Good to close for now?

ababaian commented 4 years ago

This is closed by the use of checkV #100