Closed lpipes closed 1 year ago
treefile = HIVenvSweden.trees * tree structure file name
the control file codeml.ctl on github has the above line. perhaps this was deleted by mistake? you can add it bck and try again. ziheng
I am just testing these specific parameters on a control file. I thought for runmode = -2
no control file is needed? This control file works for paml 4.9.
yes, you are right. there should be no need for a species tree if runmode = -2, so that error check is wrong. i'll edit the code to get this fixed. ziheng
Hello,
I tried to use the example alignment
HIVenvSweden.txt
with the following control filecodeml.ctl
:And I get the following error with
codeml