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abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
GNU General Public License v3.0
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problems about "multiple NSsites models" #21

Closed dll0408 closed 1 year ago

dll0408 commented 2 years ago

Hi Professor: When I run multiple NSsites models in one go by specifying several models on the NSsites line in codeml.ctl: NSsites = 0 1 2 3 7 8, only the results of NSsites=0 was outputted, and revealed "# seqs in tree file does not match. Read as the nexus format" in the screen. How can I run multiple NSsites models in one analysis? Thank you very much for your reading and replying!

sabifo4 commented 1 year ago

Hi there!

Thanks for letting us know! This issue has now been resolved. More details about what the problem was and how it was addressed are available in this other issue that reported the same problem.