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abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
GNU General Public License v3.0
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bump version number #22

Closed jayoung closed 1 year ago

jayoung commented 1 year ago

hi Ziheng,

I just stumbled on this git repo - nice!

I downloaded v4.10.6.tar.gz from the 'releases' section of the git repo just now, compiled it, and noticed that the version info is out of date when I run codeml. I can see it is out of date in the src/paml.h file, too:

#define pamlVerStr "paml version 4.10.0, September 2020"

(the precompiled version doesn't work on my system, but I imagine that will show the wrong version info too)

all the best - hope you are well,

Janet

Dr. Janet Young

Malik lab http://research.fhcrc.org/malik/en.html

Division of Basic Sciences Fred Hutchinson Cancer Center 1100 Fairview Avenue N., A2-025, P.O. Box 19024, Seattle, WA 98109-1024, USA.

tel: (206) 667 4512 email: jayoung ...at... fredhutch.org

sabifo4 commented 1 year ago

Hi Janet,

Just wanted to let you know that this issue should be now fixed in the latest PAML release paml-4.10.7.

Thanks for letting us know!