search

abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
GNU General Public License v3.0
122 stars 20 forks source link

segmentation fault #25

Closed AJFeng closed 1 year ago

AJFeng commented 1 year ago

I have the 'segmentation fault' error for the 4.10 version. I can successfully run the ORF1b data, but have this error with ORF1a data. Total sequences are about 500, and same tree for the ORF1b data and ORF1a data.

sabifo4 commented 1 year ago

Hi there!

As of today, you can download a new PAML release available in which this problem should have been solved: paml-4.10.7.

If you are using the cluster and you get this error, however, you may need to increase the amount of memory you are requesting -- perhaps your sequence alignment is quite large.

I am closing now this issue, thanks for letting us know!