abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

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# seqs in tree file does not match. Read as the nexus format. #28

Closed RetroWWU closed 1 year ago

RetroWWU commented 1 year ago

Hello, I figured out that paml 4.10.6 seems to behave differently than paml 4.9j I got the error

seqs in tree file does not match. Read as the nexus format.

in 4.10 - but not i 4.9... Is there a reason why? Thanks - N. Grundmann AZI2.tre.txt AZI2_U.fasta.txt codeml.ctl.txt

sabifo4 commented 1 year ago

Hi there!

Thanks for letting us know! This issue has now been resolved. More details about what the problem was and how it was addressed are available in this other issue that reported the same problem.