Closed myoucchent closed 11 months ago
Hi there!
You may need to add the PHYLIP header in the tree file. As you have 13 tag IDs, then your tree file should have the following:
13 1
((Dicentrarchus_labrax,(Larimichthys_crocea,(Acanthopagrus_latus,Sparus_aurata)))'>2.1',((Epinephelus_lanceolatus,Sander_lucioperca#),(Lates_calcarifer,(Oreochromis_niloticus,(Danio_rerio,(Oryzias_latipes,Oryzias_melastigma))))),(Lateolabrax_maculatus,Micropterus_salmoides));
You may want to check the section on the PAML Wiki with regards to data formatting to make sure your input files are correctly formatted.
Please let me know if that sorted out your issue so that I can close it.
Hope this helps!
thank you very much! I select a branch as root seq in my tree. I have solved this problem.
Hi, there is an error when I run the mcmctree, counld you give me some help? this is my tree: ((Dicentrarchus_labrax,(Larimichthys_crocea,(Acanthopagrus_latus,Sparus_aurata)))'>2.1',((Epinephelus_lanceolatus,Sander_lucioperca#),(Lates_calcarifer,(Oreochromis_niloticus,(Danio_rerio,(Oryzias_latipes,Oryzias_melastigma))))),(Lateolabrax_maculatus,Micropterus_salmoides));
this is error log: mcmctree mcmctree3.ctl MCMCTREE in paml version 4.10.0, September 2020
Reading options from mcmctree3.ctl.. finetune is deprecated now. Reading master tree.
Error: you should specify # seqs in the tree file.