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abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
GNU General Public License v3.0
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High Sequence Count (>2000) Causes Extended Computation Time in ConDEML #42

Closed wlhCNU closed 5 months ago

wlhCNU commented 5 months ago

Hi, I extend my heartfelt gratitude for providing such outstanding software. I analysised with over 2000 sequences and performed site model, branch model, and branch-site model analyses using condeml. The computation has been running for a week, and I've observed that it operates as a single thread on Linux. I wanted to inquire if condeml supports multi-threading functionality, as enabling this feature could significantly reduce the computation time, especially when dealing with a large number of sequences. Thanks.

sabifo4 commented 5 months ago

Hi there,

Thanks for your message! Unfortunately, PAML programs do not support this feature at the moment.

All the best, S.