peterjc
commented
2 years ago That looks like an issue within kraken-build, can you check what version of kraken you have installed?
Open codespacebyaditya opened 2 years ago
peterjc
commented
2 years ago That looks like an issue within kraken-build, can you check what version of kraken you have installed?
Tried building a kodoja database but ran into this error-
Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/taxonomy/accession2taxid ... done. ==> SIZE nucl_est.accession2taxid.gz ... done.
==> PASV ... done. ==> RETR nucl_est.accession2taxid.gz ... No such file ‘nucl_est.accession2taxid.gz’.
Kodoja failed unexpectedly with the following:
Traceback (most recent call last): File "/home/ubuntu/anaconda3/bin/kodoja_build.py", line 168, in
main()
File "/home/ubuntu/anaconda3/bin/kodoja_build.py", line 137, in main
krakenDB_build(args.output_dir, kraken_db_dir, args.threads, args.kraken_kmer,
File "/home/ubuntu/anaconda3/bin/database_modules.py", line 155, in krakenDB_build
subprocess.check_call("kraken-build --download-taxonomy --threads " +
File "/home/ubuntu/anaconda3/lib/python3.9/subprocess.py", line 373, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'kraken-build --download-taxonomy --threads 1 --db ./krakenDB/' returned non-zero exit status 8.