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abaizan / kodoja

Kodoja: identifying viruses from plant RNA sequencing data
MIT License
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Check / report Python dependencies in test script #5

Closed peterjc closed 6 years ago

peterjc commented 6 years ago

New output from the test script:

$ test/test_script.sh 
Which version of Python do we have?
Python 3.5.0
Do we have ncbi-genome-download?
0.2.5
Do we have kraken?
Kraken version 1.0
Copyright 2013-2015, Derrick Wood (dwood@cs.jhu.edu)
Do we have kaiju?
Kaiju 1.5.0
Do we have trimmomatic?
0.36
Do we have fastqc?
FastQC v0.11.6
Do we have numpy?
1.12.1
Do we have pandas?
0.19.2
Do we have biopython?
1.71.dev0
Begining tests...
...

When using TravisCI we should be able to infer all these version numbers from the installation part of the log, but I found this is useful for local testing.

peterjc commented 6 years ago

Merging #6 first should solve the failing test