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abarret / clotting_model

An IBAMR implementation of Fogelson and Guy, 2008
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simplified model activated platelet source & cohesion stress #14

Closed jmcragun closed 2 years ago

jmcragun commented 2 years ago

These changes ended up being pretty minimal however I'm very unsure if I missed something. For instance, I did not include f^a_u in the activate platelet source file, but given that it represents the transition rate from unactivated to activated, perhaps I should?

Additionally, the methods for setting up these classes are different. One of them uses index setters, and the other attempts to use context variables, however, I'm not entirely sure if the variables are fully set up the right way (I need to experiment with building these files once I have the cmake environment working, but I wanted to have my proposed changes posted because I believe this is almost ready to be merged, pending model changes).

Closes #6 Closes #10

abarret commented 2 years ago

This looks good. I'm going to squash and merge this.