search

abcd-j / data-catalog

https://data.abcd-j.de
0 stars 1 forks source link

Add new "sc-seq" UKD dataset to catalog #39

Closed tmheunis closed 2 months ago

tmheunis commented 3 months ago

This will need assistance from us to generate a file list for the data that they have on local storage

jsheunis commented 3 months ago

Waiting for communication from the authors before this can be worked on. No urgency at the moment.

mslw commented 2 months ago

In today's labmeeting we looked at five new datasets tagged with bulk sequencing - not sure if these are the sc-seq datasets, but two of these list NCBI search result page as "homepage" (e.g. this one) and individual search results can be opened to find file download links.

The content tab does not link to file content. If we combined the two (with some effort no doubt), we would have a practical realization of the "generate catalog for published data" (see also an KBI written for GEO database), something we didn't really do in the SFB1451 catalog.

jsheunis commented 2 months ago

Not the same, but directly related i.t.o. authors and field of study.

I agree, this would be a useful addition to the catalog. We can track that in a separate issue: https://github.com/abcd-j/data-catalog/issues/41

jsheunis commented 2 months ago

This has now been done: https://data.abcd-j.de/dataset/d1b56ad8-f8e9-5d4b-aa76-fe1c155ad201/1.0?tab=ABCD-J