update R package Matrix API 'as()'

[bbayukari]

change methods::as(sparse.loading, "dgCMatrix") into as(as(as(sparse.loading, "dMatrix"), "generalMatrix"), "CsparseMatrix") in R-package/R/generate.spc.matrix.R

[codecov[bot]]

Codecov Report

Merging #446 (2e9eb34) into master (df2c56b) will decrease coverage by 3.64%. The diff coverage is n/a.

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@@            Coverage Diff             @@
##           master     #446      +/-   ##
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- Coverage   93.52%   89.88%   -3.65%     
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  Files          29        9      -20     
  Lines        3212     1186    -2026     
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- Hits         3004     1066    -1938     
+ Misses        208      120      -88     

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Impacted Files	Coverage Δ
R-package/R/generate.spc.matrix.R
R-package/R/initialization.R
R-package/R/utility.R
R-package/R/generate.data.R
R-package/R/predict.abess.R
R-package/R/plot.abessrpca.R
R-package/R/extract.abess.R
R-package/R/generate.matrix.R
R-package/R/coef.abess.R
R-package/R/abesspca.R
... and 10 more

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[Mamba413]

change methods::as(sparse.loading, "dgCMatrix") into as(as(as(sparse.loading, "dMatrix"), "generalMatrix"), "CsparseMatrix") in R-package/R/generate.spc.matrix.R

I notice that you change

sparse.loading <- methods::as(sparse.loading, "dgCMatrix")

to:

sparse.loading <- as(as(as(sparse.loading, "dMatrix"), "generalMatrix"), "CsparseMatrix")

Three additional steps are required. First, find out the package that includes the three as functions. Suppose this package is abc, then you should add

#' @importFrom abd as

into the abess-package.R file. Second, remove

#' @importFrom method as

in abess-package.R file.

[Mamba413]

@bbayukari , moreover, the R build fails on all platforms, please address them.