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abhi18av / drug-resistance-prediction-cambiohack

Predicting drug resistance using H20.ai
https://cambiohack.uk/drug-resistance-prediction-using-wgs-data
MIT License
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first matrix generation with scikit-allel #10

Closed jamesbaye closed 3 years ago

jamesbaye commented 3 years ago

Generates a matrix of SNP counts where rows are SNP_IDs and columns are SAMPLE_IDs.

Here the SNP_ID is {CHR}.{POS}. An alternative could be to have the SNP_ID be {CHR}.{POS}.{ALT}

abhi18av commented 3 years ago

Nice work @jamesbaye !