abhichabhi / biojs

Automatically exported from code.google.com/p/biojs
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State of the art #1

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
Find similar projects that might overlap with the aim of BioJS

Original issue reported on code.google.com by rajido@gmail.com on 10 Aug 2011 at 1:51

GoogleCodeExporter commented 9 years ago
jBio: is a JavaScript library, their proposal is underlined by the use of 
methodologies such as object-oriented programming with inheritance and 
polymorphism, asynchronous JavaScript + XML (AJAX), and jQuery, a leading 
JavaScript library that facilitates rapid development. Hence, by using jBio 
developers can rapidly design and deploy true web 2.0 applications. 
https://www.rostlab.org/owiki/index.php/JBio
- The library was not found for downloading

bio-js: This is an attempt at a bioinformatics framework in JavaScript. Uses 
the existing framework PrototypeJS to facilitate the process and to ensure that 
the project is compatible with most operating systems and browsers. 
http://code.google.com/p/bio-js/
- under develop

BioViews: Java-Based Tools for Genomic Data Visualization
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310693/
Is a prototype genome browser applet (BioViews) that incorporates a three-level 
graphical view of genomic data: a physical map, an annotated sequence map, and 
a DNA sequence display.

Hypergeny: is an online tool for viewing large phylogenetic trees. We hope to 
help researchers visualise and understand large phylogenetic trees by offering 
a hyperbolic tree browser.
http://bioinformatics.psb.ugent.be/hypergeny/api/

bioWidgets: toolkit is a collection of Java Beans(tm) used for development of 
graphics applications and/or applets in the genomics domain. 

Cytoscape: is an open source bioinformatics software platform forvisualizing 
molecular interaction networks and biological pathways and integrating these 
networks with annotations, gene expression profiles and other state data.  
Based on Java™ technology.
http://www.cytoscape.org/what_is_cytoscape.html

Original comment by john...@gmail.com on 10 Aug 2011 at 3:56

GoogleCodeExporter commented 9 years ago
Good summary. Let's have and complete this information in a wiki page.

Original comment by rajido@gmail.com on 12 Aug 2011 at 9:27

GoogleCodeExporter commented 9 years ago
Would be nice to include this example even if it is not a proper project ... 
http://www.ebi.ac.uk/~jvillave/BioWidgets/samples/samples.html

Original comment by rajido@gmail.com on 12 Aug 2011 at 9:35

GoogleCodeExporter commented 9 years ago
Nice. 
I have submitted a new wiki page: doc_001_relatedWork
thanks

Original comment by john...@gmail.com on 12 Aug 2011 at 4:06

GoogleCodeExporter commented 9 years ago

Original comment by john...@gmail.com on 15 Aug 2011 at 8:32

GoogleCodeExporter commented 9 years ago

Original comment by john...@gmail.com on 15 Aug 2011 at 8:32