I'm encountering an issue when trying to use abicheck.py with the abipy and pymatgen libraries in my abienv conda environment. Here's the command I'm running and the error I'm facing:
/home/mtk/miniconda3/envs/abienv/bin/abicheck.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
__import__('pkg_resources').run_script('abipy==0.9.3', 'abicheck.py')
Traceback (most recent call last):
File "/home/mtk/miniconda3/envs/abienv/bin/abicheck.py", line 4, in <module>
__import__('pkg_resources').run_script('abipy==0.9.3', 'abicheck.py')
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/pkg_resources/__init__.py", line 722, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/pkg_resources/__init__.py", line 1561, in run_script
exec(code, namespace, namespace)
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/abipy-0.9.3-py3.9.egg/EGG-INFO/scripts/abicheck.py", line 11, in <module>
import abipy.flowtk as flowtk
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/abipy-0.9.3-py3.9.egg/abipy/flowtk/__init__.py", line 15, in <module>
from .tasks import *
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/abipy-0.9.3-py3.9.egg/abipy/flowtk/tasks.py", line 36, in <module>
from .abitimer import AbinitTimerParser
File "/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/abipy-0.9.3-py3.9.egg/abipy/flowtk/abitimer.py", line 2, in <module>
from pymatgen.io.abinit.abitimer import AbinitTimerParserError, AbinitTimerParser, AbinitTimerSection
ImportError: cannot import name 'AbinitTimerParserError' from 'pymatgen.io.abinit.abitimer' (/home/mtk/miniconda3/envs/abienv/lib/python3.9/site-packages/pymatgen/io/abinit/abitimer.py)
It seems that the AbinitTimerParserError class is not being imported from the pymatgen.io.abinit.abitimer module, causing the ImportError. I have already checked that both abipy and pymatgen are installed in my abienv environment.
I have tried updating both abipy and pymatgen using conda update, but the issue persists. I'm using Python 3.9.
Any suggestions on how to resolve this issue would be greatly appreciated. Thank you in advance for your help!
I'm encountering an issue when trying to use abicheck.py with the abipy and pymatgen libraries in my abienv conda environment. Here's the command I'm running and the error I'm facing:
Command:
(abienv) mtk@mtk-HP-EliteBook-x360-1030-G2:~/abipy$ abicheck.py --with-flow
Error :It seems that the AbinitTimerParserError class is not being imported from the pymatgen.io.abinit.abitimer module, causing the ImportError. I have already checked that both abipy and pymatgen are installed in my abienv environment.
I have tried updating both abipy and pymatgen using conda update, but the issue persists. I'm using Python 3.9.
Any suggestions on how to resolve this issue would be greatly appreciated. Thank you in advance for your help!