Open ctb opened 7 years ago
Assembly disco-quality-assembly500
# contigs (>= 0 bp) 34512
# contigs (>= 1000 bp) 19333
# contigs (>= 5000 bp) 6635
# contigs (>= 10000 bp) 3928
# contigs (>= 25000 bp) 1878
# contigs (>= 50000 bp) 888
Total length (>= 0 bp) 206611207
Total length (>= 1000 bp) 196426844
Total length (>= 5000 bp) 169391211
Total length (>= 10000 bp) 150559296
Total length (>= 25000 bp) 118437193
Total length (>= 50000 bp) 83655083
# contigs 34512
Largest contig 459070
Total length 206611207
GC (%) 51.23
N50 34686
N75 8579
L50 1363
L75 4404
# N's per 100 kbp 0.69
(This is length filtered for contigs >= 500 bp)
I need to check on this. Just got back from leave. Will see if any unintended checkin made it into the master. The computation performance looks like single thread for this dataset. I will verify...
do we need to set OMP_NUM_THREADS?
command:
./runDisco.sh -d podar -inP SRR606249.pe.qc.fq.gz -n 16