Open kerrwelton opened 1 month ago
Hi @kerrwelton
Thanks for the feedback! Which version are you using? It seems I've seen issue in one of the previous IsoQuant versions and had been fixed since then.
Best Andrey
I am using isoquant v2.2.0. Do I need to upgrade to a higher version?
Yes, 2.2 is more than 2 years old, current version is 3.6, I highly recommend updating.
I updated isoquant to the latest version and rerun isoquant.py. Now it runs successfully with no error message. Thanks for you rapid and helpful response. :) :)
Hi, thank you for developing this excellent software. I encountered an issue while running isoquant.py to analyze Oxford Nanopore data. Could you please let me know how to resolve it? I would greatly appreciate it.
Here are the parameters I used when running isoquant.py. isoquant.py --reference GRCh38.p14.genome.fa \ --genedb gencode.v46.annotation.gtf --complete_genedb \ --bam memcd4.bam ncd4.bam ncd8.bam --labels memcd4 ncd4 ncd8 \ --data_type nanopore \ -o isoquant_result \ --threads 80 \ --check_canonical
The error message when running isoquant.py was saved in nohup.out.log, isoquant.log is the automatically generated by isoquant.py. isoquant.log nohup.out.log