ablab / IsoQuant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
https://ablab.github.io/IsoQuant/
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input illumina bam #247

Open JhinJhinJhin opened 3 days ago

JhinJhinJhin commented 3 days ago

[ data format: "fastq", { name: "Experiment1", long read files: [ "/PATH/TO/FILE1.fastq", "/PATH/TO/FILE2.fastq" ], labels: [ "Sample1", "Sample2" ], illumina bam: ["PATH/TO/ILLUMINA1.bam"] }, { name: "Experiment2", long read files: [ "/PATH/TO/FILE3.fastq" ], illumina bam: ["PATH/TO/ILLUMINA2.bam"] } ]

can i input the replication of illumina bam? I have three bam for every Experiment. How should I edit this yaml?