Open ptrebert opened 2 years ago
Hi Peter,
Can you please try the following command on a clean repository? From the root
python ./veritymap/main.py --reads veritymap/test_dataset/test_query.fasta veritymap/test_dataset/test_target.fasta -o test_launch
Does this work? It should say
Compiling mapper...
Mapper is compiled successful!
on the first run and then finish with VerityMap finished!
.
If this works, please try
python3 setup.py install --record files.txt
veritymap --reads veritymap/test_dataset/test_query.fasta veritymap/test_dataset/test_target.fasta -o test_launch
does it end with
VerityMap finished!
?
If this works, please use VerityMap this way.
To remove the package later, please do
xargs rm -rf < files.txt
I plan to add conda support at some point in the future.
thanks for the input - as shared via slack, I will get back to this problem asap
Will VerityMap
include conda or singulariy support very soon?
It is in the plans yes, but probably not immediately. Would you like this to be done sooner @baozg ?
I also meet a install problem. Maybe singulariy or conda is more easy for people to use?
Hi, for v2.1.1-alpha, the install process
pip install .
fails with the following error:However, cmake finds
zlib
in the environmentAny advice on how to fix that?
Best, Peter