Open yqy6611 opened 7 months ago
I would suggest you to ask your system administrator. This looks like some problem at your end, e.g. some i/o problem
This is our own workstation. So any suggestions on how to fix this issue?
Check your system log. Might be something there
I have checked the system log, but there are no errors related to this.
Description of bug
I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly, spades-core process disappeared automatically during k-mer counting phase without any error messages.
spades.log
spades.log
params.txt
params.txt
SPAdes version
SPAdes v3.15.5
Operating System
Ubuntu 22.04
Python Version
Python 3.12.1
Method of SPAdes installation
conda or manual
No errors reported in spades.log