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ablab / spades

SPAdes Genome Assembler
http://ablab.github.io/spades/
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system call finished abnormally, OS return value: -9 #1281

Closed almarch24 closed 5 months ago

almarch24 commented 5 months ago

Description of bug

I've run the command: python3 spades.py -1 ../share/spades/test_dataset/ecoli_1K_1.fq.gz -2 ../share/spades/test_dataset/ecoli_1K_2.fq.gz -o ~/ecoli And then a message came: == Error == system call for: "['/Applications/SPAdes-3.15.5-Darwin/bin/spades-hammer', '/Users/a.../ecoli/corrected/configs/config.info']" finished abnormally, OS return value: -9 None Tell me please what the problem is.

spades.log

spades.log

params.txt

params.txt

SPAdes version

SPAdes-3.15.5-Darwin

Operating System

macOS Ventura 13.6.6

Python Version

Python 3.11.8

Method of SPAdes installation

manual

No errors reported in spades.log

almarch24 commented 5 months ago

Macbook's system message was “spades-hammer” cannot be opened because the developer cannot be verified.

asl commented 5 months ago

Dup of https://github.com/ablab/spades/issues/1097