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ablab / spades

SPAdes Genome Assembler
http://ablab.github.io/spades/
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Error on installing Spades on Mac M2 Chip Macbook #1283

Closed Illynani closed 2 months ago

Illynani commented 2 months ago

Description of bug

I have tried to install the SPades package to run Unicycler for hybrid-short genome assembly. However, I encountered an error while installing the SPades package on my laptop.

I am using a Macbook M2 Chip (Macbook Pro) on Sonoma 14.4.1.

I have tried several ways of installing such as ;

  1. Downloaded the binary package for MacOs; Couldn't open the spade.py on my laptop (bash: command not found)
  2. Downloaded the source code and compiled it manually - My Mac Terminal couldn't compile the source code.
  3. Downloaded and installed it using the command: brew install spades (However it returned an error as the image attached).
  4. Installed the Spades using Ubuntu on my Mac (ARM Visualization using Parallels software)

I have installed Python version 2 and version 3 on my laptop.

Is it because the SPades package is not compatible with M2 Mac Chip (ARM-based)? Do I have to use a laptop with an x86 chip?

I would appreciate very much appreciate your assistance in this matter Screenshot 2024-04-23 at 11 32 34 AM (2)

spades.log

Screenshot 2024-04-23 at 11 32 34 AM (2)

params.txt

Screenshot 2024-04-23 at 11 32 34 AM (2)

SPAdes version

3.15.2

Operating System

macOS Sonoma 14.4.1

Python Version

Python 3.10.4

Method of SPAdes installation

Binaries, Brew

No errors reported in spades.log

asl commented 2 months ago

Dup of https://github.com/ablab/spades/issues/1062