search

ablab / spades

SPAdes Genome Assembler
http://ablab.github.io/spades/
Other
756 stars 137 forks source link

No error code metaspades just terminate after 13 hours of running kmer counting #1317

Open stopguessingwho1am opened 4 months ago

stopguessingwho1am commented 4 months ago

Description of bug

My HPC job is set to run for 3 + days, I sent 3 jobs all of them terminate at 13 hours mark idk what is wrong

spades.log

spades.log

params.txt

params.txt

SPAdes version

Spades 4.0

Operating System

linux hpc

Python Version

No response

Method of SPAdes installation

manual

No errors reported in spades.log

asl commented 4 months ago

SPAdes 3.13.0 you are using is ancient. Please try the latest SPAdes 4.0

stopguessingwho1am commented 4 months ago

SPAdes 3.13.0 you are using is ancient. Please try the latest SPAdes 4.0

May I ask how to update to spades 4.0 on hpc ;-; Conda doesnt work :( and I also tried to drag the downloaded packet to my hpc but it cannot activate

asl commented 4 months ago

May I ask how to update to spades 4.0 on hpc ;-; Conda doesnt work :( and I also tried to drag the downloaded packet to my hpc but it cannot activate

You may want to ask your system administrator for this. Conda definitely contains 4.0