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ablab / spades

SPAdes Genome Assembler
http://ablab.github.io/spades/
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OS return value: 4 #1371

Open rows0 opened 1 month ago

rows0 commented 1 month ago

Description of bug

Hello,

I am attempting to assemble paired reads but am receiving an error with OS return value: 4. This problem reproduces when running spades.py --test. Any help/idea would greatly appreciated!

== Error == system call for: "['/usr/local/Cellar/spades/4.0.0/bin/spades-hammer', '/Users/rows/Class Exercise 1/SRR030257/spades_test/corrected/configs/config.info']" finished abnormally, OS return value: 4 None

spades.log

spades.log

params.txt

params.txt

SPAdes version

4.0.0

Operating System

macOS Monterey 12.7.6

Python Version

3.12.6

Method of SPAdes installation

Homebrew

No errors reported in spades.log

asl commented 1 month ago

Does the problem reproduce if you move everything to path w/o spaces?

rows0 commented 1 month ago

That was it, thank you!!