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ablab / spades

SPAdes Genome Assembler
http://ablab.github.io/spades/
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==Error== finished abnormally err code -6 #185

Open C-And opened 6 years ago

C-And commented 6 years ago

i am running a de novo genome assembly on some data provided to me. when running spades i am getting the following error == Error == system call for: "['/share/apps/centos7/spades/3.11.1/bin/spades', '/data/home/bt18567/2018-10-07-assesment/results/K21/configs/config.info']" finished abnormally, err code: -6

the assembly starts and then once it moves into the stack trace the error occurs.

here is the line of code being run: spades.py -1 input/input1/R1.fastq -2 input/input1/R2.fastq --only-assembler -k 33 -o ../results

C-And commented 6 years ago

sorry correction the command line is: spades.py -1 input/input1/R1.fastq -2 input/input1/R2.fastq --only-assembler -k 21,33,55,77 -o ../results

asl commented 6 years ago

Hello

Please attach your spades.log and params.txt files as you were instructed in the error message